The RNA transcriptome varies in response to cellular differentiation as well as environmental factors, and can be characterized by the Incoming search terms:RNA seqrna sequencingdiffsplicerna seq metrics rrna-seq analysisrna seq toolsrna-seq natureRNA-seq splicingrnaseqmRNA seq
BayesPeak - Bayesian Analysis of ChIP-seq Data, This package is an implementation of the BayesPeak algorithm for peak-calling in ChIP-seq data. Incoming search terms:Peakseqchip-seq datachip sequencingchip seqchip-seq peak callingchip-seq motifChIP-Seq data analysisMeDIP peak callinganalyse chipseqGalaxy find motif for ChIP-seq
Nebula is for both bioinformaticians and biologists. It is based on the Galaxy open source framework. Galaxy already Incoming search terms:chip-seq analysis pipelinechip seq analysis pipelinerna seq analysis workflowChIP-seqchip-seq data analysis pipelinechip seq tool setchip seq analysis pipeline galaxyonline tool chipseqchip-seq toolpipeline for chip seq analysis
RNA sequencing is becoming a standard for expression profiling experiments and many tools have been developed in the past few years to analyze RNA-Seq Incoming search terms:r bioconductor next generation sequencingeasyrnaseq rbioconductor next generation sequencinguse of bioconductor to do next generation sequencing
List of various tools to detect and trim adapter sequences from sequencing data. Cutadapt Cutadapt removes adapter sequences from high-throughput sequencing data. This is usually necessary when the read Incoming search terms:primer adaptor clipping trimmingcutadapt paired endngs reads adapters primersflexible adapter removertrimming adapter sequencesToolstoremoveadaptersequencesfromnext-generationsequencingdata|GenomicsGatewayadapter ...