DiffSplice, tool to detect the differential splicing events with RNA-seq
The RNA transcriptome varies in response to cellular differentiation as well as environmental factors, and can be characterized by the Incoming search terms:RNA seqrna sequencingdiffsplicerna-seq naturerna seq toolsrna-seq analysisrna seq metrics rrna-seq pipelineRNA-seq splicingmRNA seq
Biocondutor Packages for Analyzing Chip-seq Data
BayesPeak - Bayesian Analysis of ChIP-seq Data, This package is an implementation of the BayesPeak algorithm for peak-calling in ChIP-seq data. Incoming search terms:Peakseqchip-seq datachip seqchip sequencingChIP-Seq data analysischip-seq peak callingchip-seq motifMeDIP peak callingchip-seq inputchipseq
Nebula – a web-server for advanced ChIP-seq data analysis.
Nebula is for both bioinformaticians and biologists. It is based on the Galaxy open source framework. Galaxy already Incoming search terms:chip-seq analysis pipelinechip seq analysis pipelinerna seq analysis workflowChIP-seqchip seq tool setchip-seq data analysis pipelineonline tool chipseqchip seq analysis pipeline galaxychip-seq graph toolsChIP-Seq pipeline
easyRNASeq: a bioconductor package for processing RNA-Seq data.
RNA sequencing is becoming a standard for expression profiling experiments and many tools have been developed in the past few years to analyze RNA-Seq Incoming search terms:r bioconductor next generation sequencingeasyrnaseq rbioconductor next generation sequencinguse of bioconductor to do next generation sequencing
Tools to remove adapter sequences from next-generation sequencing data
List of various tools to detect and trim adapter sequences from sequencing data. Cutadapt Cutadapt removes adapter sequences from high-throughput sequencing data. This is usually necessary when the read Incoming search terms:cutadapt paired endprimer adaptor clipping trimmingngs reads adapters primersflexible adapter removertrimming adapter sequencesToolstoremoveadaptersequencesfromnext-generationsequencingdata|GenomicsGatewayadapter ...
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easyRNASeq: a bioconductor package for processing RNA-Seq data.
Comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers
Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells
SpliceSeq: A Resource for Analysis and Visualization of RNA-Seq Data on Alternative Splicing and Its Functional Impacts.
RNA-seq analysis of the Caenorhabditis briggsae transcriptome
GEM- Genome wide Event finding and Motif discovery
VAT: A computational framework to functionally annotate variants in personal genomes within a cloud-computing environment.
An error-eliminating fix overcomes big problem in ’3rd-gen’ genome sequencing
Aldex: ANOVA-like RNA-seq analysis
