Latest Genomics & Bioinformatics Updates

easy RNA seq

easyRNASeq: a bioconductor package for processing RNA-Seq data.

RNA sequencing is becoming a standard for expression profiling experiments and many tools have been developed in the past few years to analyze RNA-Seq
miseq-pgm-pacbio

Comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers

The Wellcome Trust Sanger Institute, UK,  recently published a comparison of the Ion Torrent PGM, Illumina Miseq, and
single cell RNA-Seq

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

Research published in the July 22 issue of Nature Biotechnology, shows for the first time that a novel genomic sequencing
Splicetoolscreen

SpliceSeq: A Resource for Analysis and Visualization of RNA-Seq Data on Alternative Splicing and Its Functional Impacts.

SpliceSeq is a resource for RNA-Seq data that provides a clear view of alternative splicing and identifies potential
Caenorhabditis_briggsae

RNA-seq analysis of the Caenorhabditis briggsae transcriptome

In this paper, the authors have reannotated the genome of Caenorhabditis briggsae, the best studied sister species of the model organism Caenorhabditis elegans. First, they applied ...
gem

GEM- Genome wide Event finding and Motif discovery

GEM is a software tool to study protein-DNA interaction using ChIP-Seq/ChIP-exo data. GEM resolves ChIP data into
VAT

VAT: A computational framework to functionally annotate variants in personal genomes within a cloud-computing environment.

The functional annotation of variants obtained through sequencing projects is generally assumed to be a simple intersection of genomic
Schatz1

An error-eliminating fix overcomes big problem in ’3rd-gen’ genome sequencing

The next “next-gen” technology in genome sequencing has gotten a major boost.
adlex

Aldex: ANOVA-like RNA-seq analysis

Adlex is an RNA-seq tool that uses the Dirichlet distribution and a transformation to identify genes that exhibit small within-
osa

OSA – a super-fast and accurate alignment tool for RNA-Seq data

OSA (Omicsoft Sequence Aligner), a super-fast and accurate alignment tool for RNA-Seq data. Benchmarked with existing methods, OSA improves mapping
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