A new study has revealed an undiscovered reprogramming mechanism that allows plants to maintain fitness down the generations.
Researchers from the John Innes Centre team led by Dr. Xiaoqi Feng made the discovery when studying germ cells – cells specialized for sexual reproduction – in flowering plants.
Germ cells are often referred to as “immortal” because they can pass their genetic material through the generations. They have been the subject of much scientific scrutiny.
This study aimed to solve a long-term debate on whether the germ cells in plants undergo an event of DNA methylation reprogramming at each reproductive cycle.
DNA methylation is a modification of DNA, which changes the activity of DNA without changing the genetic sequence.
It is a cornerstone epi-genetics – one of the fastest growing fields in life sciences with the potential to deliver improvements in human and plant health.
DNA methylation reprogramming – known to exist in animals – occurs most dramatically in germ cells and regulates the reproductive success from generation to generation.Published today in Nature Genetics the JIC team worked in collaboration with colleagues from the University of Leicester to reveal for the first time the existence of DNA methylation changes in the germline of flowering plants.
They also reveal the mechanism by which this reprogramming happens – via a process known as de novo (anew) DNA methylation and it’s biological significance in maintaining reproductive success.
Dr. Feng, the project leader at the John Innes Centre, explains: “We knew this DNA methylation re-setting is extensive and important in animals where methylation is erased and re-established between generations.
“But because plants carry DNA methylation information really well through generations, it was believed there was not much methylation reprogramming going on in plant germ cells. What we have discovered shows plant germ cells also go through methylation reprogramming and functionally it is essential.”
The John Innes Centre team made the discovery while applying genetic analysis to male sexual lineage in the reference plant Arabidopsis thaliana.
The research funded by BBSRC is a key breakthrough in the fundamental understanding of epigenetic regulation of plant development.
Dr. Feng explained “Our research shows that developmentally regulated DNA methylation reprogramming can regulate plant development. Scientists have been searching for this for a long time. We show that genes can be regulated in specific cells via the de novo DNA methylation pathway, which is prevalent in many plant tissues, hence this mechanism may apply to many processes in plants.”
“Understanding how this naturally occurs during plant development is the first step in understanding how specific genes can be targeted by this epigenetic modification and hence regulated.
“Additionally, understanding how DNA methylation is inherited from the germ cells is essential for understanding the transgenerational stability of incurred methylation changes. Both are essential to harness epigenetics for crop improvement.”
James Walker, Hongbo Gao, Jingyi Zhang, Billy Aldridge, Martin Vickers, James D. Higgins & Xiaoqi Feng, Sexual-lineage-specific DNA methylation regulates meiosis in Arabidopsis, Nature Genetics (2017) doi:10.1038/s41588-017-0008-5