List/Grid Bioinformatics

bedops

BEDOPS: high-performance genomic feature operations

BEDOPS, a software suite for common genomic analysis tasks which offers improved flexibility, scalability and execution time characteristics over previously Incoming search terms:sam ...
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Tools to remove adapter sequences from next-generation sequencing data

List of various tools to detect and trim adapter sequences from sequencing data. Cutadapt Cutadapt removes adapter sequences from high-throughput sequencing data. This is usually necessary ...
sam tools

The Sequence alignment/map (SAM) format and SAMtools

SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing Incoming search terms:The Sequence alignment/map (SAM)format ...
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BEDTools: a flexible suite of utilities for comparing genomic features

Bedtools is a new software suite for the comparison, manipulation and annotation of genomic features in Browser Extensible Data (BED) and General Incoming search terms:bedtool groupbygenomecoveragebed ...
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