List/Grid RNAseq Tools
DiffSplice, tool to detect the differential splicing events with RNA-seq
The RNA transcriptome varies in response to cellular differentiation as well as environmental factors, and can be characterized by the
Incoming search terms:RNA seqrna sequencingdiffsplicerna-seq ...
Bioconductor R packages for the analysis of RNA-seq Data
ArrayExpressHTS – ArrayExpress High Throughput Sequencing Processing Pipeline. RNA-Seq processing pipeline for public ArrayExpress experiments or local
Incoming search terms:RNA-seqr ...
Tbrowse- HTML5 Transcriptome Browser
tbrowse is HTML5/javascript based browser designed specifically for visualizing RNA-seq results. This project aims to
Incoming search terms:cloud-enabled pipelinebioconductor html5html5 ...
easyRNASeq: a bioconductor package for processing RNA-Seq data.
RNA sequencing is becoming a standard for expression profiling experiments and many tools have been developed in the past few years to analyze RNA-Seq
Incoming search terms:r bioconductor ...
SpliceSeq: A Resource for Analysis and Visualization of RNA-Seq Data on Alternative Splicing and Its Functional Impacts.
SpliceSeq is a resource for RNA-Seq data that provides a clear view of alternative splicing and identifies potential
Incoming search terms:chip-seq and alternative splicingvisualize ...
Aldex: ANOVA-like RNA-seq analysis
Adlex is an RNA-seq tool that uses the Dirichlet distribution and a transformation to identify genes that exhibit small within-
Incoming search terms:Rna-seq anovaANOVA RNA-seqaldex ...
OSA – a super-fast and accurate alignment tool for RNA-Seq data
OSA (Omicsoft Sequence Aligner), a super-fast and accurate alignment tool for RNA-Seq data. Benchmarked with existing methods, OSA improves mapping
Incoming search terms:osa a fast ...
RNA-SeQC: RNA-seq metrics for quality control and process optimization.
RNA-SeQC isĀ a program which provides key measures of data quality. These metrics include yield, alignment and
Incoming search terms:RNA-SeQC alternative splicingRSEM outputngs rna ...
RNASEQR-a streamlined and accurate RNA-seq sequence analysis program
Next-generation sequencing (NGS) technologies-based transcriptomic profiling method often called RNA-seq has been widely used to study global gene
Incoming search terms:rnaseqreufrhqxrdj1wp\accurate\rna_baatcptRNASEQR ...
deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns
deepBlockAlign is a tool for the alignment of two RNA-seq read patterns. The analysis starts from closely spaced blocks of
Incoming search terms:deepblockalign: a tool for aligning ...