List/Grid RNAseq Tools

differential splicing

DiffSplice, tool to detect the differential splicing events with RNA-seq

The RNA transcriptome varies in response to cellular differentiation as well as environmental factors, and can be characterized by the Incoming search terms:RNA seqrna sequencingdiffsplicerna ...
RNAseq

Bioconductor R packages for the analysis of RNA-seq Data

ArrayExpressHTS – ArrayExpress High Throughput Sequencing Processing Pipeline. RNA-Seq processing pipeline for public ArrayExpress experiments or local Incoming search terms:RNA-seqr ...
TBROWSE

Tbrowse- HTML5 Transcriptome Browser

tbrowse is HTML5/javascript based browser designed specifically for visualizing RNA-seq results. This project aims to Incoming search terms:cloud-enabled pipelinebioconductor html5html5 ...
easy RNA seq

easyRNASeq: a bioconductor package for processing RNA-Seq data.

RNA sequencing is becoming a standard for expression profiling experiments and many tools have been developed in the past few years to analyze RNA-Seq Incoming search terms:r bioconductor ...
Splicetoolscreen

SpliceSeq: A Resource for Analysis and Visualization of RNA-Seq Data on Alternative Splicing and Its Functional Impacts.

SpliceSeq is a resource for RNA-Seq data that provides a clear view of alternative splicing and identifies potential Incoming search terms:chip-seq and alternative splicingspliceseqSpliceSeq: ...
adlex

Aldex: ANOVA-like RNA-seq analysis

Adlex is an RNA-seq tool that uses the Dirichlet distribution and a transformation to identify genes that exhibit small within- Incoming search terms:Rna-seq anovaANOVA RNA-seqaldex ...
osa

OSA – a super-fast and accurate alignment tool for RNA-Seq data

OSA (Omicsoft Sequence Aligner), a super-fast and accurate alignment tool for RNA-Seq data. Benchmarked with existing methods, OSA improves mapping Incoming search terms:osa a fast ...
rna-seqc

RNA-SeQC: RNA-seq metrics for quality control and process optimization.

RNA-SeQC isĀ  a program which provides key measures of data quality. These metrics include yield, alignment and Incoming search terms:RNA-SeQC alternative splicingRSEM outputngs rna ...
RNASeqer

RNASEQR-a streamlined and accurate RNA-seq sequence analysis program

Next-generation sequencing (NGS) technologies-based transcriptomic profiling method often called RNA-seq has been widely used to study global gene Incoming search terms:rnaseqrRNASEQR ...
deepblockalign

deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns

deepBlockAlign is a tool for the alignment of two RNA-seq read patterns. The analysis starts from closely spaced blocks of Incoming search terms:deepblockalign: a tool for aligning ...
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