List/Grid RNA-seq

differential splicing

DiffSplice, tool to detect the differential splicing events with RNA-seq

The RNA transcriptome varies in response to cellular differentiation as well as environmental factors, and can be characterized by the Incoming search terms:RNA seqrna sequencingdiffsplicerna-seq ...
RNAseq

Bioconductor R packages for the analysis of RNA-seq Data

ArrayExpressHTS – ArrayExpress High Throughput Sequencing Processing Pipeline. RNA-Seq processing pipeline for public ArrayExpress experiments or local Incoming search terms:RNA-seqr ...
Pogonus_chalceus

De novo Transcriptome Assembly in the Wing Polymorphic Salt Marsh Beetle Pogonus chalceus

The salt marsh beetle Pogonus chalceus represents a unique opportunity to understand and study the origin and evolution Incoming search terms:wing studyRNA-seq transcriptome assembly ...
TBROWSE

Tbrowse- HTML5 Transcriptome Browser

tbrowse is HTML5/javascript based browser designed specifically for visualizing RNA-seq results. This project aims to Incoming search terms:cloud-enabled pipelinebioconductor html5html5 ...
easy RNA seq

easyRNASeq: a bioconductor package for processing RNA-Seq data.

RNA sequencing is becoming a standard for expression profiling experiments and many tools have been developed in the past few years to analyze RNA-Seq Incoming search terms:r bioconductor ...
single cell RNA-Seq

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

Research published in the July 22 issue of Nature Biotechnology, shows for the first time that a novel genomic sequencing Incoming search terms:full-length mrna-seq from single-cell ...
Splicetoolscreen

SpliceSeq: A Resource for Analysis and Visualization of RNA-Seq Data on Alternative Splicing and Its Functional Impacts.

SpliceSeq is a resource for RNA-Seq data that provides a clear view of alternative splicing and identifies potential Incoming search terms:chip-seq and alternative splicingspliceseqSpliceSeq: ...
Caenorhabditis_briggsae

RNA-seq analysis of the Caenorhabditis briggsae transcriptome

In this paper, the authors have reannotated the genome of Caenorhabditis briggsae, the best studied sister species of the model organism Caenorhabditis elegans. First, they applied ...
adlex

Aldex: ANOVA-like RNA-seq analysis

Adlex is an RNA-seq tool that uses the Dirichlet distribution and a transformation to identify genes that exhibit small within- Incoming search terms:Rna-seq anovaANOVA RNA-seqaldex ...
osa

OSA – a super-fast and accurate alignment tool for RNA-Seq data

OSA (Omicsoft Sequence Aligner), a super-fast and accurate alignment tool for RNA-Seq data. Benchmarked with existing methods, OSA improves mapping Incoming search terms:osa a fast ...
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