List/Grid Chip-Seq

chipseq

Biocondutor Packages for Analyzing Chip-seq Data

BayesPeak - Bayesian Analysis of ChIP-seq Data, This package is an implementation of the BayesPeak algorithm for peak-calling in ChIP-seq data. Incoming search terms:Peakseqchip-seq ...
Nebula

Nebula – a web-server for advanced ChIP-seq data analysis.

Nebula is for both bioinformaticians and biologists. It is based on the Galaxy open source framework. Galaxy already Incoming search terms:chip-seq analysis pipelinechip seq analysis ...
Chip seq work flow

A complete workflow for the analysis of full-size ChIP-seq data sets using peak-motifs.

This protocol explains how to use the online integrated pipeline ‘peak-motifs‘  to predict motifs and binding sites in full-size peak sets obtained by chromatin Incoming ...
gem

GEM- Genome wide Event finding and Motif discovery

GEM is a software tool to study protein-DNA interaction using ChIP-Seq/ChIP-exo data. GEM resolves ChIP data into Incoming search terms:Gemchip java Jargem chip-exole genome GEMGenome-Wide ...
SEQSITE

SeqSite: ChIP-Seq Binding Site Identification

SeqSite is an efficient and easy-to-use software tool implementing a novel method for identifying and pinpointing Incoming search terms:seqsiteseqsigeseqeiteSeqSite ChIPSeqhow to use ...
peakseq

PeakSeq: a program for identifying and ranking peak regions in ChIP-Seq

PeakSeq is a program developed by Mark Gerstein’ lab for identifying and ranking peak regions in ChIP-Seq experiments. It takes as input, mapped reads Incoming search terms:illumina ...
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