DiffSplice, tool to detect the differential splicing events with RNA-seq
The RNA transcriptome varies in response to cellular differentiation as well as environmental factors, and can be characterized by the Incoming search terms:RNA seqrna sequencingdiffsplicerna-seq naturerna seq toolsrna-seq analysisrna seq metrics rrna-seq pipelineRNA-seq splicingmRNA seq
Biocondutor Packages for Analyzing Chip-seq Data
BayesPeak - Bayesian Analysis of ChIP-seq Data, This package is an implementation of the BayesPeak algorithm for peak-calling in ChIP-seq data. Incoming search terms:Peakseqchip-seq datachip seqchip sequencingChIP-Seq data analysischip-seq peak callingchip-seq motifMeDIP peak callingchip-seq inputchipseq
Nebula – a web-server for advanced ChIP-seq data analysis.
Nebula is for both bioinformaticians and biologists. It is based on the Galaxy open source framework. Galaxy already Incoming search terms:chip-seq analysis pipelinechip seq analysis pipelinerna seq analysis workflowChIP-seqchip seq tool setchip-seq data analysis pipelineonline tool chipseqchip seq analysis pipeline galaxychip-seq graph toolsChIP-Seq pipeline
easyRNASeq: a bioconductor package for processing RNA-Seq data.
RNA sequencing is becoming a standard for expression profiling experiments and many tools have been developed in the past few years to analyze RNA-Seq Incoming search terms:r bioconductor next generation sequencingeasyrnaseq rbioconductor next generation sequencinguse of bioconductor to do next generation sequencing
Tools to remove adapter sequences from next-generation sequencing data
List of various tools to detect and trim adapter sequences from sequencing data. Cutadapt Cutadapt removes adapter sequences from high-throughput sequencing data. This is usually necessary when the read Incoming search terms:cutadapt paired endprimer adaptor clipping trimmingngs reads adapters primersflexible adapter removertrimming adapter sequencesToolstoremoveadaptersequencesfromnext-generationsequencingdata|GenomicsGatewayadapter ...
Latest Genomics & Bioinformatics UpdatesSubscribe to RSS feed
PASSion: a pattern growth algorithm based pileline for splice site detection in paired-end RNA-Seq data
RNASEQR-a streamlined and accurate RNA-seq sequence analysis program
SeqSite: ChIP-Seq Binding Site Identification
deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns
Illumina Announces Novel Human Exome Content Available on Multiple BeadChip Formats
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome.
Galaxy CloudMan: delivering cloud compute clusters.
National Human Genome Research Institute funds development of third generation DNA sequencing technologies
The Sequence alignment/map (SAM) format and SAMtools
