Latest Genomics & Bioinformatics Updates

passion

PASSion: a pattern growth algorithm based pileline for splice site detection in paired-end RNA-Seq data

PASSion uses the mapped read in a pair as anchor and then uses a high resolution algorithm, pattern growth, to remap the proximal and distal fragments of the
RNASeqer

RNASEQR-a streamlined and accurate RNA-seq sequence analysis program

Next-generation sequencing (NGS) technologies-based transcriptomic profiling method often called RNA-seq has been widely used to study global gene
SEQSITE

SeqSite: ChIP-Seq Binding Site Identification

SeqSite is an efficient and easy-to-use software tool implementing a novel method for identifying and pinpointing
deepblockalign

deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns

deepBlockAlign is a tool for the alignment of two RNA-seq read patterns. The analysis starts from closely spaced blocks of
human exome beadchip

Illumina Announces Novel Human Exome Content Available on Multiple BeadChip Formats

Illumina, Inc. (NASDAQ: ILMN) today announced the availability of novel human exome content for three new microarrays, the Infinium HumanExome, OmniExpressExome, and HumanOmni5Exome ...
RSEM

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome.

RSEM is an user-friendly software package for quantifying gene and isoform abundances from single-end or paired-end RNA-Seq data. RSEM outputs
cloudman

Galaxy CloudMan: delivering cloud compute clusters.

CloudMan is a cloud manager that orchestrates the steps required to provision and manage compute clusters on a cloud infrastructure, all through a web
Molecule DNA

National Human Genome Research Institute funds development of third generation DNA sequencing technologies

More than $18 million in grants to spur the development of a third generation of DNA sequencing technologies was
sam tools

The Sequence alignment/map (SAM) format and SAMtools

SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing
Screen Shot 2012-08-11 at 6.14.46 AM

BEDTools: a flexible suite of utilities for comparing genomic features

Bedtools is a new software suite for the comparison, manipulation and annotation of genomic features in Browser Extensible Data (BED) and General
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